Having learnt of Wonder Woman's inability to return to Themyscira, Doctor Veronica Cale, a wealthy and powerful woman, set into motion a plan to use Wonder Woman to find Themyscira. Years earlier, Cale's daughter Izzy had her soul stolen by the gods Phobos and Deimos. They told Veronica that they would only return her daughter to her if she helped them find Wonder Woman, and got the location of Themyscira from her. Seeing no other option, Cale had formed a team called Godwatch, dedicated to locating Diana and Themyscira.
Although they do not appear in Justice League: War, the Olympian Gods are briefly mentioned by Wonder Woman during a conversation with Superman about the other five heroes, referencing Batman as Hades (who is just as dark and mysterious just as Maxie Zeus did in the "Fire From Olympus" episode of Batman: The Animated Series), Green Lantern as Apollo (the God of Light), Flash as Hermes (the Messenger of Olympus and God of Speed), Cyborg as Hephaestus (the Blacksmith of Olympus and God of Metal) and Shazam as Zeus (God of Lightning).
Zeus has made a woman called Zola pregnant. Hera, due to this, is furious. She sets out to kill Zola, but Hermes finds her first, only to find out that Zola does not want to come with Hermes. Zola opens the door, and an arrow is shot at her direction; Hermes pushes her away in time, and gives her a key, as assassins sent by Hera and it teleports to Wonder Woman’s apartment, because Hermes enlisted Wonder Woman to protect Zola. Zola gives Wonder Woman the key, and it teleports both Wonder Woman and Zola back to Zola’s house. After Zola finds out that she is pregnant with Zeus, it gets revealed that one of Zeus’ children is going to take his place, by Zeus’ own will. Wonder Woman takes Zola, along with Hermes, to Themiscyra where Diana explains to her Mother, Queen Hippolyta, why she took with herself Zola and Hermes to Themiscyra. Alongside all of this, Hippolyta tells Diana about her true origins; that her real father is Zeus. Diana’s reaction to this isn’t very well, so she decides to abandon Themiscyra. Hera is aware of the fact that Wonder Woman is Zeus’ daughter, and she arrives to Themiscyra, furiously. Wonder Woman realized she did a mistake by leaving her home, so she went back to Themiscyra where she sees that everyone has been turned into snakes by Hera, except for Hippolyta, she was turned into stone. Apollo arrives in a bar searching for War (Ares), and explains to him that Zeus doesn’t even exist from what he’s sources says. Apollo takes this as his chance to become the king of Olympus and the Gods.
As Hippolyta was still a clay statue, Diana was forced to take the Amazon throne, at least until she could find a way to turn her mother back to normal. At the same time, the Justice League had discovered strange environmental events that had destroyed small villages around the world, leaving only vegetation behind. Furious, Wonder Woman attacked Swamp Thing, accusing him of causing such devastation, while Swamp Thing claimed innocence. Aquaman defused the situation before it could escalate any further. Later, Wonder Woman returned to Themyscira, only to discover Hippolyta's statue had crumbled. On a training session, Clark asked Diana if she wanted to talk about her recent experiences, but Diana replied that, as queen, grief is not a luxury she could afford. Later, Diana was called for a meeting by the Amazon council, which forced a choice on her: become permanent Queen or abdicate the throne. Before the discussion could continue, the island was attacked by Stymphalian Birds, Ares’ pets who were now drawn to Diana as the God of War. Accepting her new responsibilities, Diana successfully defended Themyscira.
In one episode, a newspaper editor named Brown, desperate to discover Wonder Woman’s past, assigns a team of reporters to chase her down; she easily escapes them. Brown, gone half mad, is committed to a hospital. Wonder Woman disguises herself as a nurse and brings him a scroll. “This parchment seems to be the history of that girl you call ‘Wonder Woman’!” she tells him. “A strange, veiled woman left it with me.” Brown leaps out of bed and races back to the city desk, where he cries out, parchment in hand, “Stop the presses! I’ve got the history of Wonder Woman!” But Wonder Woman’s secret history isn’t written on parchment. Instead, it lies buried in boxes and cabinets and drawers, in thousands of documents, housed in libraries, archives and collections spread all over the United States, including the private papers of creator Marston—papers that, before I saw them, had never before been seen by anyone outside of Marston’s family.
Not long after this, Athena sensed a dark destiny for the gods amidst the cosmic mechanations of Alexander Luthor Jr.. In the crisis created by his chaos, Diana was forced to kill Maxwell Lord, and incurred the ire of the world's public. The U.S. government responded by mobilizing against Themyscira, and Diana realized that as long as she was a target, the Amazons would never be safe. Diana prayed to the gods to take the Amazons to safety, but got more than she bargained for. On Olympus, she pleaded against Athena's decision to remove the gods from Earth's affairs. Regardless, the gods departed, leaving Diana bereft of family and faith.
The character's depiction in the New 52 has been mostly along the same lines as the remainder of her modern appearances, though as of yet much remains to be explained about her character. One development with the character in this new universe is that some of the developments which occurred during Flashpoint are occasionally referenced (such as her using London as her base of operations). In her New 52, written by Brian Azzarello, Wonder Woman's origin is that she is the daughter of Hippolyta and Zeus; no longer is she a golem of clay and earth, but an actual demigoddess.
While Superman watched out for Zod, Diana visited the deserted Themyscira to speak to her mother, still a clay statue. In her absence, a demon from Tartarus had escaped from its prison and roamed free on the island. Wonder Woman destroyed the creature and sealed the gates to Tartarus with her lasso. Leaving the island, she received word from Batman that Superman was engaging Zod and Faora in battle. Reaching Superman’s side, Wonder Woman steadily overwhelmed Faora until Zod threatened Superman’s life. Wonder Woman was forced to let the criminals go.